Federated Learning Framework for IID and Non-IID datasets of Medical Images

Advances have been made in the field of Machine Learning showing that it is an effective tool that can be used for solving real world problems. This success is hugely attributed to the availability of accessible data which is not the case for many fields such as healthcare, a primary reason being the issue of privacy. Federated Learning (FL) is a technique that can be used to overcome the limitation of availability of data at a central location and allows for training machine learning models on private data or data that cannot be directly accessed. It allows the use of data to be decoupled from the governance (or control) over data. In this paper, we present an easy-to-use framework that provides a complete pipeline to let researchers and end users train any model on image data from various sources in a federated manner. We also show a comparison in results between models trained in a federated fashion and models trained in a centralized fashion for Independent and Identically Distributed (IID) and non IID datasets. The Intracranial Brain Hemorrhage dataset and the Pneumonia Detection dataset provided by the Radiological Society of North America (RSNA) are used for validating the FL framework and comparative analysis

Isolation, identification and antibiotic sensitivity pattern of Escherichia coli isolated from various clinical sample in a tertiary care hospital, Jaipur, Rajasthan, India

Background: Escherichia coli is one of the most frequent causes of many bacterial infections, including Urinary Tract Infections (UTI), blood stream infections, otitis media, pneumonia, meningitis, traveler’s diarrhoea, enteric infections and systemic infections. This study was done with the aim to surveying antibiotic sensitivity pattern of isolated Escherichia coli in both sex attended in NIMS Hospital, Jaipur under the taken time period.Methods: In this cross-sectional study, 62 Escherichia coli were isolated from various clinical specimens of the patients attending both OPD and IPD. The strains were selected using the laboratory standard methods and culture-specific. The antibiotic susceptibility testing was performed using Kirby-Bauer disk diffusion method.Results: Out of total 62 isolates of Escherichia coli 26(41.93%) isolates were from male while 36(58.064%) from female patients. Maximum sensitivity were shown by Polymyxin B and Colistin i.c 100% followed by Nitrofuratonin 82.5% followed by Meropenem 79.03%, Aztreonam 72.58%, Piperacillin/ Tazobactam and Ciprofloxacin 61.30%, each Amikacin 56.45%, Imipenem 54.83%, Ofloxacin 45.16%, Cefepime 43.54%, Ceftazidime 38.71%, Gentamycin and Ceftriaxone 37.09% each, Cefotaxime 30.64%, Norfloxacin 27.5%. Maximum resistance shown against Norfloxacin 72.5%, followed by Gentamycin and Ceftriaxone 62.90%, Ceftazidime 61.30%.Conclusions: Escherichia coli infected more in urinary tract infection as compare to other sample in human, and it is common in female than male. Regular monitoring of antimicrobial susceptibility for E.coli is recommended to improve treatment. A changing trend in antibiotic sensitivity profile of the isolates need to be monitored as there is limited availability of newer drugs and the emergence of resistant bacteria far exceeds the rate of new drug development

Perovskite-perovskite tandem photovoltaics with optimized bandgaps

We demonstrate four and two-terminal perovskite-perovskite tandem solar cells with ideally matched bandgaps. We develop an infrared absorbing 1.2eV bandgap perovskite, $FA_{0.75}Cs_{0.25}Sn_{0.5}Pb_{0.5}I_3$, that can deliver 14.8 % efficiency. By combining this material with a wider bandgap $FA_{0.83}Cs_{0.17}Pb(I_{0.5}Br_{0.5})_3$ material, we reach monolithic two terminal tandem efficiencies of 17.0 % with over 1.65 volts open-circuit voltage. We also make mechanically stacked four terminal tandem cells and obtain 20.3 % efficiency. Crucially, we find that our infrared absorbing perovskite cells exhibit excellent thermal and atmospheric stability, unprecedented for Sn based perovskites. This device architecture and materials set will enable 'all perovskite' thin film solar cells to reach the highest efficiencies in the long term at the lowest costs

Measuring routine childhood vaccination coverage in 204 countries and territories, 1980-2019 : a systematic analysis for the Global Burden of Disease Study 2020, Release 1

Background Measuring routine childhood vaccination is crucial to inform global vaccine policies and programme implementation, and to track progress towards targets set by the Global Vaccine Action Plan (GVAP) and Immunization Agenda 2030. Robust estimates of routine vaccine coverage are needed to identify past successes and persistent vulnerabilities. Drawing from the Global Burden of Diseases, Injuries, and Risk Factors Study (GBD) 2020, Release 1, we did a systematic analysis of global, regional, and national vaccine coverage trends using a statistical framework, by vaccine and over time. Methods For this analysis we collated 55 326 country-specific, cohort-specific, year-specific, vaccine-specific, and dosespecific observations of routine childhood vaccination coverage between 1980 and 2019. Using spatiotemporal Gaussian process regression, we produced location-specific and year-specific estimates of 11 routine childhood vaccine coverage indicators for 204 countries and territories from 1980 to 2019, adjusting for biases in countryreported data and reflecting reported stockouts and supply disruptions. We analysed global and regional trends in coverage and numbers of zero-dose children (defined as those who never received a diphtheria-tetanus-pertussis [DTP] vaccine dose), progress towards GVAP targets, and the relationship between vaccine coverage and sociodemographic development. Findings By 2019, global coverage of third-dose DTP (DTP3; 81.6% [95% uncertainty interval 80.4-82 .7]) more than doubled from levels estimated in 1980 (39.9% [37.5-42.1]), as did global coverage of the first-dose measles-containing vaccine (MCV1; from 38.5% [35.4-41.3] in 1980 to 83.6% [82.3-84.8] in 2019). Third- dose polio vaccine (Pol3) coverage also increased, from 42.6% (41.4-44.1) in 1980 to 79.8% (78.4-81.1) in 2019, and global coverage of newer vaccines increased rapidly between 2000 and 2019. The global number of zero-dose children fell by nearly 75% between 1980 and 2019, from 56.8 million (52.6-60. 9) to 14.5 million (13.4-15.9). However, over the past decade, global vaccine coverage broadly plateaued; 94 countries and territories recorded decreasing DTP3 coverage since 2010. Only 11 countries and territories were estimated to have reached the national GVAP target of at least 90% coverage for all assessed vaccines in 2019. Interpretation After achieving large gains in childhood vaccine coverage worldwide, in much of the world this progress was stalled or reversed from 2010 to 2019. These findings underscore the importance of revisiting routine immunisation strategies and programmatic approaches, recentring service delivery around equity and underserved populations. Strengthening vaccine data and monitoring systems is crucial to these pursuits, now and through to 2030, to ensure that all children have access to, and can benefit from, lifesaving vaccines. Copyright (C) 2021 The Author(s). Published by Elsevier Ltd.Peer reviewe

Squeeze Excitation Embedded Attention UNet for Brain Tumor Segmentation

Deep Learning based techniques have gained significance over the past few years in the field of medicine. They are used in various applications such as classifying medical images, segmentation and identification. The existing architectures such as UNet, Attention UNet and Attention Residual UNet are already currently existing methods for the same application of brain tumor segmentation, but none of them address the issue of how to extract the features in channel level. In this paper, we propose a new architecture called Squeeze Excitation Embedded Attention UNet (SEEA-UNet), this architecture has both Attention UNet and Squeeze Excitation Network for better results and predictions, this is used mainly because to get information at both Spatial and channel levels. The proposed model was compared with the existing architectures based on the comparison it was found out that for lesser number of epochs trained, the proposed model performed better. Binary focal loss and Jaccard Coefficient were used to monitor the model's performance

Neural networks for on-the-fly single-shot state classification

Neural networks have proven to be efficient for a number of practical applications ranging from image recognition to identifying phase transitions in quantum physics models. In this paper we investigate the application of neural networks to state classification in a single-shot quantum measurement. We use dispersive readout of a superconducting transmon circuit to demonstrate an increase in assignment fidelity for both two and three state classification. More importantly, our method is ready for on-the-fly data processing without overhead or need for large data transfer to a hard drive. In addition we demonstrate the capacity of neural networks to be trained against experimental imperfections, such as phase drift of a local oscillator in a heterodyne detection scheme

Evaluating Optical Remote Sensing Methods for Estimating Leaf Area Index for Corn and Soybean

The leaf area index (LAI) is a key crop biophysical variable influencing many vegetation processes. Spatial LAI estimates are essential to develop and improve spatial modeling tools to monitor vegetation conditions at large regional scales. Numerous optical remote sensing methods have been explored to retrieve crop-specific LAI at a regional scale using satellite observations. However, a major challenge is selecting a method that performance well under various conditions without local scale calibration. As such, we assessed the performance of existing statistical and physical approaches, developed based on parametric, non-parametric and radiative transfer model (RTM)-look-up-table based inversion, using field observations from two geographically distant locations and Landsat 5, 7, and 8 satellite observations. These methods were implemented for corn and soybeans cultivated at two locations in the U.S (i.e., Mead, Nebraska, and Bushland, Texas). The evaluation metrics (i.e., Root Mean Square Error (RMSE), Mean Absolute Error (MAE), and Coefficient of Determination (R2)) were used to study the performance of each method, and then the methods were ranked based on these metrics. Our study showed that overall parametric methods outperformed other methods. The RMSE (MAE) for the top five methods was less than 1.3 (0.95) for corn and 1.0 (0.8) for soybeans, irrespective of location. Even though they outperformed, parametric methods exhibited inconsistency in their performance. For instance, the SR_CA_cross method ranked 1 for corn, however, it performed poorly for soybean (ranked 15). The non-parametric methods showed moderate accuracy partly due to the availability of a smaller number of observations for training. The RTM-LUT inversion physical-based approach was found to perform reasonably well RMSE (MAE) less than 1.5 (1.0) consistently irrespective of location and crop, implying that this approach is more suitable for regional-scale LAI estimation. The results of this study highlighted the drawbacks and advantages of available optical remote sensing approaches to estimate LAI for corn and soybean crops using Landsat imagery. These results are of interest for remote sensing and modeling communities developing spatial-scale approaches to model and monitor agricultural vegetation

Evaluating Optical Remote Sensing Methods for Estimating Leaf Area Index for Corn and Soybean

The leaf area index (LAI) is a key crop biophysical variable influencing many vegetation processes. Spatial LAI estimates are essential to develop and improve spatial modeling tools to monitor vegetation conditions at large regional scales. Numerous optical remote sensing methods have been explored to retrieve crop-specific LAI at a regional scale using satellite observations. However, a major challenge is selecting a method that performance well under various conditions without local scale calibration. As such, we assessed the performance of existing statistical and physical approaches, developed based on parametric, non-parametric and radiative transfer model (RTM)-look-up-table based inversion, using field observations from two geographically distant locations and Landsat 5, 7, and 8 satellite observations. These methods were implemented for corn and soybeans cultivated at two locations in the U.S (i.e., Mead, Nebraska, and Bushland, Texas). The evaluation metrics (i.e., Root Mean Square Error (RMSE), Mean Absolute Error (MAE), and Coefficient of Determination (R2)) were used to study the performance of each method, and then the methods were ranked based on these metrics. Our study showed that overall parametric methods outperformed other methods. The RMSE (MAE) for the top five methods was less than 1.3 (0.95) for corn and 1.0 (0.8) for soybeans, irrespective of location. Even though they outperformed, parametric methods exhibited inconsistency in their performance. For instance, the SR_CA_cross method ranked 1 for corn, however, it performed poorly for soybean (ranked 15). The non-parametric methods showed moderate accuracy partly due to the availability of a smaller number of observations for training. The RTM-LUT inversion physical-based approach was found to perform reasonably well RMSE (MAE) less than 1.5 (1.0) consistently irrespective of location and crop, implying that this approach is more suitable for regional-scale LAI estimation. The results of this study highlighted the drawbacks and advantages of available optical remote sensing approaches to estimate LAI for corn and soybean crops using Landsat imagery. These results are of interest for remote sensing and modeling communities developing spatial-scale approaches to model and monitor agricultural vegetation

Evaluating Optical Remote Sensing Methods for Estimating Leaf Area Index for Corn and Soybean

The leaf area index (LAI) is a key crop biophysical variable influencing many vegetation processes. Spatial LAI estimates are essential to develop and improve spatial modeling tools to monitor vegetation conditions at large regional scales. Numerous optical remote sensing methods have been explored to retrieve crop-specific LAI at a regional scale using satellite observations. However, a major challenge is selecting a method that performance well under various conditions without local scale calibration. As such, we assessed the performance of existing statistical and physical approaches, developed based on parametric, non-parametric and radiative transfer model (RTM)-look-up-table based inversion, using field observations from two geographically distant locations and Landsat 5, 7, and 8 satellite observations. These methods were implemented for corn and soybeans cultivated at two locations in the U.S (i.e., Mead, Nebraska, and Bushland, Texas). The evaluation metrics (i.e., Root Mean Square Error (RMSE), Mean Absolute Error (MAE), and Coefficient of Determination (R2)) were used to study the performance of each method, and then the methods were ranked based on these metrics. Our study showed that overall parametric methods outperformed other methods. The RMSE (MAE) for the top five methods was less than 1.3 (0.95) for corn and 1.0 (0.8) for soybeans, irrespective of location. Even though they outperformed, parametric methods exhibited inconsistency in their performance. For instance, the SR_CA_cross method ranked 1 for corn, however, it performed poorly for soybean (ranked 15). The non-parametric methods showed moderate accuracy partly due to the availability of a smaller number of observations for training. The RTM-LUT inversion physical-based approach was found to perform reasonably well RMSE (MAE) less than 1.5 (1.0) consistently irrespective of location and crop, implying that this approach is more suitable for regional-scale LAI estimation. The results of this study highlighted the drawbacks and advantages of available optical remote sensing approaches to estimate LAI for corn and soybean crops using Landsat imagery. These results are of interest for remote sensing and modeling communities developing spatial-scale approaches to model and monitor agricultural vegetation